http://www.archiroot.org.uk/ 2012-05-20T14:26:50+02:00 http://www.archiroot.org.uk/ http://www.archiroot.org.uk/lib/images/favicon.ico text/html 2012-04-02T11:20:08+02:00 lionel http://www.archiroot.org.uk/doku.php/start?rev=1333358408&do=diff1333358408 This web page collects different tools, data and information about quantitative root architecture analysis. Segmentation of microscopy data, Visualization of 3D architecture ( Here a maritime pine by F.Danjon), Simulation of root architectures. Visit my work website for background information on my research. <dupuy.lx@gmail.com> text/html 2012-04-02T10:59:01+02:00 lionel http://www.archiroot.org.uk/doku.php/navigation/balloonplugin?rev=1333357141&do=diff1333357141 An ImageJ plugin that allows the segmentation off cell wall boundaries from microscopy images. The plugin is now available on Fiji. Please visit the Fiji web pages for updated information on the plugin Author: Lionel Dupuy Download You can find the java class files [here]. The plugin is functional but still under development. text/html 2011-02-16T23:16:09+02:00 lionel http://www.archiroot.org.uk/doku.php/navigation/archiroot2?rev=1297894569&do=diff1297894569 How does it work Aquiring topological information A root system is represented as a graph object. A root portion is represented as an edge (e couple of vertices) in the graph and is associated to different types of properties e.g. diameter. Recording the whole architecture necessitates a recursive pathway to be followed throughout the root system, with information about each link and segment being recorded at each stage of the measurment. The connection between two segments of the same root a…