This page gives a short description of how to build your own Rhizotron Camera using webcams. (L. Dupuy)
This ImageJ Balloon Segmentation plugin has been developed to extract cell architectures from live imaging datasets. It uses a physical "balloon inflation" algorithm for finding the cell boundaries from RGB images.
(Author: L. Dupuy)
MWaves is a python program that simulate the dynamics of root meristems distribution in soil. It uses the finite volume method to solve the equations of conservation of the meristem quantities.
(Author: L. Dupuy)
CellModeller is python module for 2D multicellular analysis and computing. It consist fundamentally of a generic data structure (multiscale graph representation) and elementary methods or operations to both query and modify such objects (e.g get the neighbour of a cell or modify the concentration of its constituents). The behaviour and properties of each entity in the structure (vertex, wall, cell ...) can be controlled through user specified models, using python scripting language.
(Authors: L. Dupuy and J. Mackenzie)
Simul3R is a simple Matlab© program designed to simulate root architectures using elementary branching and expansion functions.
(Author: L. Dupuy)
SimulDens is a Matlab© program that reconstruct root architectures from mappings of branching density. This program was developed to show that plant architectural processes can be represented by continuous variable, as an alternative to representing explicitly the whole network of interconnected branches.
(Author: L. Dupuy)